DEFINITIONS OF PATHOLOGY 1. The study of the essential nature of disease, including symptoms/signs, pathogens, complications, and morphologic consequences including structural and functional alterations in cells, tissues, and organs. 2. The study of all aspects of the disease process focusing on the pathogenesis leading to classical structural changes (gross and histopathology) as well as molecular alteration OVERVIEW OF PATHOLOGY 1. Etiology (cause) a. Genetic b. Acquired 2. Pathogenesis: temporal sequence and patterns of cellular injury that lead to disease 3. Morphologic changes of t h e disease process a. Gross changes b. Microscopic changes 4. Clinical significance a. Signs and symptoms of specific diseases b. Disease course—complications c. Prognosis METHODS USED IN PATHOLOGY 1. Gross examination of organs a. Gross examination of organs on exam questions has two major components: i. Identifying the organ ii. Identifying the pathology b. Useful gross features i. Size ii. Shape iii. Consistency iv. Color 2. Microscopic examination of tissue a. Light microscopy Common denominator: Hematoxylin binds nucleic acids and calcium salts, while eosin stains the majority of proteins (both extracellular and intracellular). b. Other histochemical stains (chemical reactions) i. Prussian blue—iron ii. Congo red—amyloid iii. Acid fast (Ziel-Neelson, Pite)—acid-fast bacilli iv. Periodic acid-Schiff (PAS)—with high carbohydrate content molecules v. Gram stain—bacteria vi. Trichrome—cells and connective tissue vii. Reticulin—collagen type III molecules c. Immunohistochemical (antibody) stains i. Cytokeratin—epithelial cells ii. Vimentin—cells of mesenchymal origin except the three muscle types; stains many sarcomas iii. Desmin—smooth, cardiac, and skeletal myosin iv. Prostate specific antigen (PSA) v. Many others 3. Ancillary techniques a. Immunofluorescence microscopy (IFM) is typically used for: i. Renal diseases ii. Autoimmune diseases b. Transmission electron microscopy (EM) is typically used for: i. Renal disease ii. Neoplasms iii. Infections iv. Genetic disorders 4, Molecular techniques a. Protein electrophoresis b. Southern and Western blots c. Polymerase chain reaction (PCR) d. Cytogenetic analysis, e.g., karyotyping, in situ hybridization studies i. Hematoxylin and eosin (H&E)—gold standard stain